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Peptide record

TPDB15583

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB15583
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
RLLRACYCRGRFCVCVGR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C89H151N33O20S4
NDEQHIKMPSTW
R
2131.63
9.95
5
0
7
+5
2.50
0.333
81.11
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
1740
0.82
5
Residue Composition
number
1
A
5
R
0
N
0
D
4
C
0
E
0
Q
2
G
0
H
0
I
2
L
0
K
0
M
1
F
0
P
0
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 1 R: 5 N: 0 D: 0 C: 4 E: 0 Q: 0 G: 2 H: 0 I: 0 L: 2 K: 0 M: 0 F: 1 P: 0 S: 0 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
18 reviewed residue count
C89H151N33O20S4 sequence-only estimate (linear, free termini)
2131.63 sequence-only estimate (linear, free termini)
9.95 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
2.50 sequence-only estimate (linear, free termini)
0.333 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.