TPDB

3D PDB MODEL

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TPDB ID TPDB15558

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 50-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

GTPLFYGANGYLTRENGKYVYRVTKDPVSAVFGVISNGWGSAGAGFGPQH

FASTA

>TPDB15558|Antibacterial|length=50
GTPLFYGANGYLTRENGKYVYRVTKDPVSAVFGVISNGWGSAGAGFGPQH

Formula C241H353N65O69

Absent Amino Acids CM

Common Amino Acids G

Mass 5264.85

PI 9.71

Basic Residues 5

Acidic Residues 2

Hydrophobic Residues 20

Net Charge +2

Boman Index 1.15

Hydrophobicity -0.234

Aliphatic Index 60.40

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 11460

Absorbance 280nm 217.67

Polar Residues 14

number

4

A

2

R

3

N

1

D

0

C

1

E

1

Q

10

G

1

H

1

I

2

L

2

K

0

M

3

F

3

P

3

S

3

T

1

W

4

Y

5

V

Amino Acid Distribution

A: 4 R: 2 N: 3 D: 1 C: 0 E: 1 Q: 1 G: 10 H: 1 I: 1 L: 2 K: 2 M: 0 F: 3 P: 3 S: 3 T: 3 W: 1 Y: 4 V: 5

Length

50

Formula

C241H353N65O69

Mass

5264.85

PI

9.71

Net Charge

+2

Boman Index

1.15

Hydrophobicity

-0.234

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.