TPDB

3D PDB MODEL

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TPDB ID TPDB15534

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 103-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

MRELSLLDLKMAKGGYDRGETIAGAVGAAIGADIGGPVGGIIGTVVGSELYNSINEGWTMAPGVSQGVGSYNPNYNGSLVSPGYSSSWGGAWGGSTSSAGGGS

FASTA

>TPDB15534|Antibacterial|length=103
MRELSLLDLKMAKGGYDRGETIAGAVGAAIGADIGGPVGGIIGTVVGSELYNSINEGWTMAPGVSQGVGSYNPNYNGSLVSPGYSSSWGGAWGGSTSSAGGGS

Formula C436H674N120O147S3

Absent Amino Acids CHF

Common Amino Acids G

Mass 10045.04

PI 4.22

Basic Residues 4

Acidic Residues 7

Hydrophobic Residues 39

Net Charge -3

Boman Index 5.28

Hydrophobicity -0.008

Aliphatic Index 73.88

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 23950

Absorbance 280nm 238.43

Polar Residues 29

number

9

A

2

R

5

N

3

D

0

C

4

E

1

Q

25

G

0

H

6

I

6

L

2

K

3

M

0

F

4

P

14

S

4

T

3

W

5

Y

7

V

Amino Acid Distribution

A: 9 R: 2 N: 5 D: 3 C: 0 E: 4 Q: 1 G: 25 H: 0 I: 6 L: 6 K: 2 M: 3 F: 0 P: 4 S: 14 T: 4 W: 3 Y: 5 V: 7

Length

103

Formula

C436H674N120O147S3

Mass

10045.04

PI

4.22

Net Charge

-3

Boman Index

5.28

Hydrophobicity

-0.008

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.