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Peptide record

TPDB15518

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB15518
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
WGRRCCGWGAGRRYCVRW
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C97H142N36O20S3
NDEQHILKMFPST
R
2228.60
10.96
5
0
6
+5
3.02
-0.811
21.67
Mammalian: 2.8 hour Yeast: 3 min E.coli: 2 min
18115
8.13
4
Residue Composition
number
1
A
5
R
0
N
0
D
3
C
0
E
0
Q
4
G
0
H
0
I
0
L
0
K
0
M
0
F
0
P
0
S
0
T
3
W
1
Y
1
V
Amino Acid Distribution
A: 1 R: 5 N: 0 D: 0 C: 3 E: 0 Q: 0 G: 4 H: 0 I: 0 L: 0 K: 0 M: 0 F: 0 P: 0 S: 0 T: 0 W: 3 Y: 1 V: 1
Chemical Descriptors
18 reviewed residue count
C97H142N36O20S3 sequence-only estimate (linear, free termini)
2228.60 sequence-only estimate (linear, free termini)
10.96 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
3.02 sequence-only estimate (linear, free termini)
-0.811 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.