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Peptide record

TPDB15495

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
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TPDB15495
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
YLGYLEQLLRLK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C72H117N17O18
ANDCHIMFPSTWV
L
1508.82
9.56
2
1
7
+1
0.63
0.050
162.50
Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min
2980
1.98
3
Residue Composition
number
0
A
1
R
0
N
0
D
0
C
1
E
1
Q
1
G
0
H
0
I
5
L
1
K
0
M
0
F
0
P
0
S
0
T
0
W
2
Y
0
V
Amino Acid Distribution
A: 0 R: 1 N: 0 D: 0 C: 0 E: 1 Q: 1 G: 1 H: 0 I: 0 L: 5 K: 1 M: 0 F: 0 P: 0 S: 0 T: 0 W: 0 Y: 2 V: 0
Chemical Descriptors
12 reviewed residue count
C72H117N17O18 sequence-only estimate (linear, free termini)
1508.82 sequence-only estimate (linear, free termini)
9.56 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
0.63 sequence-only estimate (linear, free termini)
0.050 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.