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Peptide record

TPDB15471

Antibacterial standard
15 amino acids
Basic Information
3D PDB MODEL
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TPDB15471
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 15-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
PVLPGQAASSRPSPV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C64H107N19O20
NDCEHIKMFTWY
P
1462.67
11.05
1
0
5
+1
0.87
-0.093
78.00
Mammalian: >20 hour Yeast: >20 hour E.coli: ?
0
0.00
4
Residue Composition
number
2
A
1
R
0
N
0
D
0
C
0
E
1
Q
1
G
0
H
0
I
1
L
0
K
0
M
0
F
4
P
3
S
0
T
0
W
0
Y
2
V
Amino Acid Distribution
A: 2 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 1 H: 0 I: 0 L: 1 K: 0 M: 0 F: 0 P: 4 S: 3 T: 0 W: 0 Y: 0 V: 2
Chemical Descriptors
15 reviewed residue count
C64H107N19O20 sequence-only estimate (linear, free termini)
1462.67 sequence-only estimate (linear, free termini)
11.05 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
0.87 sequence-only estimate (linear, free termini)
-0.093 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.