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Peptide record

TPDB15464

Antibacterial standard
16 amino acids
Basic Information
3D PDB MODEL
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TPDB15464
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 16-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
FKNPNSDKSKWLTGPQ
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C83H127N23O25
ARCEHIMYV
K
1847.06
10.32
3
1
3
+2
2.65
-1.619
24.38
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
5500
2.98
6
Residue Composition
number
0
A
0
R
2
N
1
D
0
C
0
E
1
Q
1
G
0
H
0
I
1
L
3
K
0
M
1
F
2
P
2
S
1
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 0 N: 2 D: 1 C: 0 E: 0 Q: 1 G: 1 H: 0 I: 0 L: 1 K: 3 M: 0 F: 1 P: 2 S: 2 T: 1 W: 1 Y: 0 V: 0
Chemical Descriptors
16 reviewed residue count
C83H127N23O25 sequence-only estimate (linear, free termini)
1847.06 sequence-only estimate (linear, free termini)
10.32 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
2.65 sequence-only estimate (linear, free termini)
-1.619 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.