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Peptide record

TPDB15443

Antibacterial standard
13 amino acids
Basic Information
3D PDB MODEL
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TPDB15443
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 13-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
IGGIGTVPVGRVE
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C55H96N16O17
ANDCQHLKMFSWY
G
1253.46
6.97
1
1
5
-0
-0.11
0.746
126.92
Mammalian: 20 hour Yeast: 30 min E.coli: >10 hour
0
0.00
1
Residue Composition
number
0
A
1
R
0
N
0
D
0
C
1
E
0
Q
4
G
0
H
2
I
0
L
0
K
0
M
0
F
1
P
0
S
1
T
0
W
0
Y
3
V
Amino Acid Distribution
A: 0 R: 1 N: 0 D: 0 C: 0 E: 1 Q: 0 G: 4 H: 0 I: 2 L: 0 K: 0 M: 0 F: 0 P: 1 S: 0 T: 1 W: 0 Y: 0 V: 3
Chemical Descriptors
13 reviewed residue count
C55H96N16O17 sequence-only estimate (linear, free termini)
1253.46 sequence-only estimate (linear, free termini)
6.97 sequence-only estimate (linear, free termini)
-0 sequence-only estimate (linear, free termini)
-0.11 sequence-only estimate (linear, free termini)
0.746 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.