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Peptide record

TPDB15442

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB15442
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
GIGTVPVGRV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C42H75N13O12
ANDCEQHLKMFSWY
GV
954.14
11.05
1
0
4
+1
-0.24
0.910
126.00
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
1
Residue Composition
number
0
A
1
R
0
N
0
D
0
C
0
E
0
Q
3
G
0
H
1
I
0
L
0
K
0
M
0
F
1
P
0
S
1
T
0
W
0
Y
3
V
Amino Acid Distribution
A: 0 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 3 H: 0 I: 1 L: 0 K: 0 M: 0 F: 0 P: 1 S: 0 T: 1 W: 0 Y: 0 V: 3
Chemical Descriptors
10 reviewed residue count
C42H75N13O12 sequence-only estimate (linear, free termini)
954.14 sequence-only estimate (linear, free termini)
11.05 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
-0.24 sequence-only estimate (linear, free termini)
0.910 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.