TPDB

3D PDB MODEL

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TPDB ID TPDB15435

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 41-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

QLPCDYLSGLGFGEDACNTDCIAKGHKSGFCTGLVCRCRTL

FASTA

>TPDB15435|Antibacterial|length=41
QLPCDYLSGLGFGEDACNTDCIAKGHKSGFCTGLVCRCRTL

Formula C183H291N53O58S6

Absent Amino Acids MW

Common Amino Acids CG

Mass 4354.00

PI 6.75

Basic Residues 5

Acidic Residues 4

Hydrophobic Residues 12

Net Charge -0

Boman Index 4.44

Hydrophobicity 0.046

Aliphatic Index 69.02

Half Life

Mammalian: 0.8 hour Yeast: 10 min E.coli: >10 hour

Extinction Coefficient Cystines 1865

Absorbance 280nm 42.83

Polar Residues 14

number

2

A

2

R

1

N

3

D

6

C

1

E

1

Q

6

G

1

H

1

I

5

L

2

K

0

M

2

F

1

P

2

S

3

T

0

W

1

Y

1

V

Amino Acid Distribution

A: 2 R: 2 N: 1 D: 3 C: 6 E: 1 Q: 1 G: 6 H: 1 I: 1 L: 5 K: 2 M: 0 F: 2 P: 1 S: 2 T: 3 W: 0 Y: 1 V: 1

Length

41

Formula

C183H291N53O58S6

Mass

4354.00

PI

6.75

Net Charge

-0

Boman Index

4.44

Hydrophobicity

0.046

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.