TPDB

3D PDB MODEL

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TPDB ID TPDB15429

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 39-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

VTCDLLEPFLGPAPCMIHCIVRFRKRTGYCNSQNVCVCR

FASTA

>TPDB15429|Antibacterial|length=39
VTCDLLEPFLGPAPCMIHCIVRFRKRTGYCNSQNVCVCR

Formula C191H309N57O51S7

Absent Amino Acids W

Common Amino Acids C

Mass 4444.33

PI 8.31

Basic Residues 6

Acidic Residues 2

Hydrophobic Residues 14

Net Charge +3

Boman Index 4.58

Hydrophobicity 0.251

Aliphatic Index 82.31

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 1865

Absorbance 280nm 41.96

Polar Residues 13

number

1

A

4

R

2

N

1

D

6

C

1

E

1

Q

2

G

1

H

2

I

3

L

1

K

1

M

2

F

3

P

1

S

2

T

0

W

1

Y

4

V

Amino Acid Distribution

A: 1 R: 4 N: 2 D: 1 C: 6 E: 1 Q: 1 G: 2 H: 1 I: 2 L: 3 K: 1 M: 1 F: 2 P: 3 S: 1 T: 2 W: 0 Y: 1 V: 4

Length

39

Formula

C191H309N57O51S7

Mass

4444.33

PI

8.31

Net Charge

+3

Boman Index

4.58

Hydrophobicity

0.251

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.