TPDB

3D PDB MODEL

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TPDB ID TPDB15427

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 36-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

CIANGNGCQPDGRQGNCCSGFCYKQRGWVAGYCRRR

FASTA

>TPDB15427|Antibacterial|length=36
CIANGNGCQPDGRQGNCCSGFCYKQRGWVAGYCRRR

Formula C162H251N59O48S6

Absent Amino Acids EHLMT

Common Amino Acids G

Mass 3985.50

PI 8.89

Basic Residues 6

Acidic Residues 1

Hydrophobic Residues 8

Net Charge +5

Boman Index 3.04

Hydrophobicity -0.819

Aliphatic Index 24.44

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8855

Absorbance 280nm 222.18

Polar Residues 15

number

2

A

5

R

3

N

1

D

6

C

0

E

3

Q

7

G

0

H

1

I

0

L

1

K

0

M

1

F

1

P

1

S

0

T

1

W

2

Y

1

V

Amino Acid Distribution

A: 2 R: 5 N: 3 D: 1 C: 6 E: 0 Q: 3 G: 7 H: 0 I: 1 L: 0 K: 1 M: 0 F: 1 P: 1 S: 1 T: 0 W: 1 Y: 2 V: 1

Length

36

Formula

C162H251N59O48S6

Mass

3985.50

PI

8.89

Net Charge

+5

Boman Index

3.04

Hydrophobicity

-0.819

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.