TPDB

3D PDB MODEL

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TPDB ID TPDB15426

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 34-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

CINNGDGCQPDGRQGNCCSGYCHKEPGWVTGYCR

FASTA

>TPDB15426|Antibacterial|length=34
CINNGDGCQPDGRQGNCCSGYCHKEPGWVTGYCR

Formula C148H221N49O50S6

Absent Amino Acids ALMF

Common Amino Acids G

Mass 3679.04

PI 6.75

Basic Residues 4

Acidic Residues 3

Hydrophobic Residues 5

Net Charge -0

Boman Index 6.30

Hydrophobicity -0.924

Aliphatic Index 20.00

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8855

Absorbance 280nm 240.69

Polar Residues 15

number

0

A

2

R

3

N

2

D

6

C

1

E

2

Q

7

G

1

H

1

I

0

L

1

K

0

M

0

F

2

P

1

S

1

T

1

W

2

Y

1

V

Amino Acid Distribution

A: 0 R: 2 N: 3 D: 2 C: 6 E: 1 Q: 2 G: 7 H: 1 I: 1 L: 0 K: 1 M: 0 F: 0 P: 2 S: 1 T: 1 W: 1 Y: 2 V: 1

Length

34

Formula

C148H221N49O50S6

Mass

3679.04

PI

6.75

Net Charge

-0

Boman Index

6.30

Hydrophobicity

-0.924

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.