TPDB

3D PDB MODEL

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TPDB ID TPDB15390

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 148-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

MKVWQCVLWICAITLHSARSQSSDQDGWIREALDLYNQKDDGEFCFKFLSDLPDALLEEEGDSQSIGFLIKETDCLKSEGQDLEQCDYKEDGEVKACVLSAEEEVKCVSLSEKRRTRRAIKKLKTKALNKLKQKLQAVGNLIGSVIKG

FASTA

>TPDB15390|Antibacterial|length=148
MKVWQCVLWICAITLHSARSQSSDQDGWIREALDLYNQKDDGEFCFKFLSDLPDALLEEEGDSQSIGFLIKETDCLKSEGQDLEQCDYKEDGEVKACVLSAEEEVKCVSLSEKRRTRRAIKKLKTKALNKLKQKLQAVGNLIGSVIKG

Formula C730H1186N200O231S8

Absent Amino Acids

Common Amino Acids L

Mass 16717.13

PI 5.16

Basic Residues 24

Acidic Residues 26

Hydrophobic Residues 53

Net Charge -3

Boman Index 47.44

Hydrophobicity -0.457

Aliphatic Index 90.27

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 19855

Absorbance 280nm 118.77

Polar Residues 37

number

9

A

6

R

3

N

12

D

7

C

14

E

9

Q

9

G

1

H

8

I

18

L

17

K

1

M

4

F

1

P

12

S

4

T

3

W

2

Y

8

V

Amino Acid Distribution

A: 9 R: 6 N: 3 D: 12 C: 7 E: 14 Q: 9 G: 9 H: 1 I: 8 L: 18 K: 17 M: 1 F: 4 P: 1 S: 12 T: 4 W: 3 Y: 2 V: 8

Length

148

Formula

C730H1186N200O231S8

Mass

16717.13

PI

5.16

Net Charge

-3

Boman Index

47.44

Hydrophobicity

-0.457

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.