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Peptide record

TPDB15378

Antibacterial standard
12 amino acids
Basic Information
3D PDB MODEL
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TPDB15378
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 12-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
QWGYGPYGGYGG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C60H72N14O17
ARNDCEHILKMFSTV
G
1261.32
5.84
0
0
4
-0
-0.17
-1.025
0.00
Mammalian: 0.8 hour Yeast: 10 min E.coli: >10 hour
9970
7.90
4
Residue Composition
number
0
A
0
R
0
N
0
D
0
C
0
E
1
Q
6
G
0
H
0
I
0
L
0
K
0
M
0
F
1
P
0
S
0
T
1
W
3
Y
0
V
Amino Acid Distribution
A: 0 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 6 H: 0 I: 0 L: 0 K: 0 M: 0 F: 0 P: 1 S: 0 T: 0 W: 1 Y: 3 V: 0
Chemical Descriptors
12 reviewed residue count
C60H72N14O17 sequence-only estimate (linear, free termini)
1261.32 sequence-only estimate (linear, free termini)
5.84 sequence-only estimate (linear, free termini)
-0 sequence-only estimate (linear, free termini)
-0.17 sequence-only estimate (linear, free termini)
-1.025 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.