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Peptide record

TPDB15374

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
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TPDB15374
Antibacterial
Anti-infective peptides
dbAMP
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.
Sequence
FLGALFKVASKVLPSVKL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C94H157N21O21
RNDCEQHIMTWY
L
1917.41
10.84
3
0
11
+3
-1.05
1.206
146.11
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
0
0.00
2
Residue Composition
number
2
A
0
R
0
N
0
D
0
C
0
E
0
Q
1
G
0
H
0
I
4
L
3
K
0
M
2
F
1
P
2
S
0
T
0
W
0
Y
3
V
Amino Acid Distribution
A: 2 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 0 L: 4 K: 3 M: 0 F: 2 P: 1 S: 2 T: 0 W: 0 Y: 0 V: 3
Chemical Descriptors
18 reviewed residue count
C94H157N21O21 sequence-only estimate (linear, free termini)
1917.41 sequence-only estimate (linear, free termini)
10.84 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
-1.05 sequence-only estimate (linear, free termini)
1.206 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.