TPDB

3D PDB MODEL

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TPDB ID TPDB15287

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP DRAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 63-aa standard natural antibacterial peptide sequence curated from dbAMP, DRAMP, and Peptipedia, with an available 3D structural model.

Sequence

MNFNKFFVLFALIMVAVVGQSEAGWLKKLGKKIERVGQHTRDATIQTIGVAQQAVNVAATLKG

FASTA

>TPDB15287|Antibacterial|length=63
MNFNKFFVLFALIMVAVVGQSEAGWLKKLGKKIERVGQHTRDATIQTIGVAQQAVNVAATLKG

Formula C311H508N86O83S2

Absent Amino Acids CPY

Common Amino Acids AV

Mass 6844.10

PI 10.81

Basic Residues 9

Acidic Residues 3

Hydrophobic Residues 32

Net Charge +5

Boman Index 7.03

Hydrophobicity 0.302

Aliphatic Index 105.24

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5500

Absorbance 280nm 80.36

Polar Residues 13

number

8

A

2

R

3

N

1

D

0

C

2

E

5

Q

6

G

1

H

4

I

5

L

6

K

2

M

4

F

0

P

1

S

4

T

1

W

0

Y

8

V

Amino Acid Distribution

A: 8 R: 2 N: 3 D: 1 C: 0 E: 2 Q: 5 G: 6 H: 1 I: 4 L: 5 K: 6 M: 2 F: 4 P: 0 S: 1 T: 4 W: 1 Y: 0 V: 8

Length

63

Formula

C311H508N86O83S2

Mass

6844.10

PI

10.81

Net Charge

+5

Boman Index

7.03

Hydrophobicity

0.302

Evidence 1 Activity

Source & Reference

Database Source dbAMP DRAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.