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Peptide record

TPDB15243

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB15243
Antibacterial
Anti-infective peptides
dbAMP DRAMP Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from dbAMP, DRAMP, and Peptipedia, with an available 3D structural model.
Sequence
LPRHTLHCVAYHGYCFHSKV
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C108H158N32O25S2
NDEQIMW
H
2368.76
9.00
6
0
8
+2
0.96
-0.085
73.00
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
3105
1.31
6
Residue Composition
number
1
A
1
R
0
N
0
D
2
C
0
E
0
Q
1
G
4
H
0
I
2
L
1
K
0
M
1
F
1
P
1
S
1
T
0
W
2
Y
2
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 0 C: 2 E: 0 Q: 0 G: 1 H: 4 I: 0 L: 2 K: 1 M: 0 F: 1 P: 1 S: 1 T: 1 W: 0 Y: 2 V: 2
Chemical Descriptors
20 reviewed residue count
C108H158N32O25S2 sequence-only estimate (linear, free termini)
2368.76 sequence-only estimate (linear, free termini)
9.00 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
0.96 sequence-only estimate (linear, free termini)
-0.085 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.