TPDB

3D PDB MODEL

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TPDB ID TPDB15128

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 43-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

YDTEIQGWTCGSRGLCRKHCYAQEHTVGYHGCPRRYRCCALRF

FASTA

>TPDB15128|Antibacterial|length=43
YDTEIQGWTCGSRGLCRKHCYAQEHTVGYHGCPRRYRCCALRF

Formula C217H327N71O60S6

Absent Amino Acids NM

Common Amino Acids RC

Mass 5082.78

PI 8.57

Basic Residues 10

Acidic Residues 3

Hydrophobic Residues 12

Net Charge +4

Boman Index 6.33

Hydrophobicity -0.765

Aliphatic Index 38.60

Half Life

Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min

Extinction Coefficient Cystines 11835

Absorbance 280nm 232.84

Polar Residues 16

number

2

A

6

R

0

N

1

D

6

C

2

E

2

Q

5

G

3

H

1

I

2

L

1

K

0

M

1

F

1

P

1

S

3

T

1

W

4

Y

1

V

Amino Acid Distribution

A: 2 R: 6 N: 0 D: 1 C: 6 E: 2 Q: 2 G: 5 H: 3 I: 1 L: 2 K: 1 M: 0 F: 1 P: 1 S: 1 T: 3 W: 1 Y: 4 V: 1

Length

43

Formula

C217H327N71O60S6

Mass

5082.78

PI

8.57

Net Charge

+4

Boman Index

6.33

Hydrophobicity

-0.765

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.