TPDB

3D PDB MODEL

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TPDB ID TPDB15060

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 24-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

VCGETCVGGTCNTPGCTCSWPVCT

FASTA

>TPDB15060|Antibacterial|length=24
VCGETCVGGTCNTPGCTCSWPVCT

Formula C94H148N26O34S6

Absent Amino Acids ARDQHILKMFY

Common Amino Acids C

Mass 2378.72

PI 3.29

Basic Residues 0

Acidic Residues 1

Hydrophobic Residues 4

Net Charge -1

Boman Index 1.13

Hydrophobicity 0.442

Aliphatic Index 36.25

Half Life

Mammalian: 100 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5875

Absorbance 280nm 246.98

Polar Residues 13

number

0

A

0

R

1

N

0

D

6

C

1

E

0

Q

4

G

0

H

0

I

0

L

0

K

0

M

0

F

2

P

1

S

5

T

1

W

0

Y

3

V

Amino Acid Distribution

A: 0 R: 0 N: 1 D: 0 C: 6 E: 1 Q: 0 G: 4 H: 0 I: 0 L: 0 K: 0 M: 0 F: 0 P: 2 S: 1 T: 5 W: 1 Y: 0 V: 3

Length

24

Formula

C94H148N26O34S6

Mass

2378.72

PI

3.29

Net Charge

-1

Boman Index

1.13

Hydrophobicity

0.442

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.