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Peptide record

TPDB15026

Antibacterial Antifungal standard
255 amino acids
Basic Information
3D PDB MODEL
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TPDB15026
Antibacterial Antifungal
Anti-infective peptides
dbAMP CAFPdb
standard
No
A 255-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from dbAMP and CAFPdb, with an available 3D structural model.
Sequence
STTHQEVRPLAYFPPTVWGNRFASLTFNPSEFESYDERVIVLKKKVKDILISSTSDSVETVILIDLLCRLGVSYHFENDIEELLSKIFNSQPDLVDEKECDLYTAAIVFRVFRQHGFKMSSDVFSKFKDSDGKFKESLRGDAKGMLSLFEASHLSVHGEDILEEAFAFTKDYLQSSAVELFPNLKRHITNALEQPFHSGVPRLEARKFIDLYEADIECRNETLLEFAKLDYNRVQLLHQQELCQFSKWWKDLNLA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C1339H2058N346O396S6
L
29531.51
5.09
38
41
105
-10
1.80
-0.296
89.45
Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour
27180
0.92
62
Residue Composition
number
14
A
12
R
9
N
18
D
4
C
23
E
9
Q
8
G
8
H
12
I
31
L
18
K
2
M
20
F
8
P
23
S
10
T
3
W
7
Y
16
V
Amino Acid Distribution
A: 14 R: 12 N: 9 D: 18 C: 4 E: 23 Q: 9 G: 8 H: 8 I: 12 L: 31 K: 18 M: 2 F: 20 P: 8 S: 23 T: 10 W: 3 Y: 7 V: 16
Chemical Descriptors
255 reviewed residue count
C1339H2058N346O396S6 sequence-only estimate (linear, free termini)
29531.51 sequence-only estimate (linear, free termini)
5.09 sequence-only estimate (linear, free termini)
-10 sequence-only estimate (linear, free termini)
1.80 sequence-only estimate (linear, free termini)
-0.296 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb