TPDB

3D PDB MODEL

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TPDB ID TPDB14705

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 72-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

MKCVMIFLVLTLVVLMAEPGEGLIGSLFRGAKAIFRGARQGWRSHKAVSRYRARYVRRPVIYYHRVYPNEER

FASTA

>TPDB14705|Antibacterial|length=72
MKCVMIFLVLTLVVLMAEPGEGLIGSLFRGAKAIFRGARQGWRSHKAVSRYRARYVRRPVIYYHRVYPNEER

Formula C384H613N115O92S4

Absent Amino Acids D

Common Amino Acids R

Mass 8441.05

PI 11.27

Basic Residues 16

Acidic Residues 4

Hydrophobic Residues 36

Net Charge +10

Boman Index 8.89

Hydrophobicity -0.063

Aliphatic Index 94.72

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 12950

Absorbance 280nm 153.42

Polar Residues 12

number

6

A

11

R

1

N

0

D

1

C

4

E

1

Q

6

G

2

H

4

I

6

L

3

K

3

M

3

F

3

P

3

S

1

T

1

W

5

Y

8

V

Amino Acid Distribution

A: 6 R: 11 N: 1 D: 0 C: 1 E: 4 Q: 1 G: 6 H: 2 I: 4 L: 6 K: 3 M: 3 F: 3 P: 3 S: 3 T: 1 W: 1 Y: 5 V: 8

Length

72

Formula

C384H613N115O92S4

Mass

8441.05

PI

11.27

Net Charge

+10

Boman Index

8.89

Hydrophobicity

-0.063

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.