TPDB

3D PDB MODEL

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TPDB ID TPDB14659

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP

Sequence_Type

standard

Has_Modification No

Description A 192-aa standard natural antibacterial peptide sequence curated from dbAMP, with an available 3D structural model.

Sequence

MAGRTRIPFNGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDGNLVIQDNGATVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVDSLALWNGTPAIPLVPGAIDSLLLAPGSELVQGVVYGAGASKLVFQGDGNLVAYGPNGAATWNAGTQ

FASTA

>TPDB14659|Antibacterial|length=192
MAGRTRIPFNGVGTSVLPAYQTLSAGQYLLSPNQRFKLLLQGDGNLVIQDNGATVWVANEQQPFSSTIPLRNKKAPLAFYVQYGAFLDDYSRRRVWLTDNSTFTSNDQWNRTHLVLQDDGNIVLVDSLALWNGTPAIPLVPGAIDSLLLAPGSELVQGVVYGAGASKLVFQGDGNLVAYGPNGAATWNAGTQ

Formula C932H1440N254O277S1

Absent Amino Acids C

Common Amino Acids L

Mass 20667.28

PI 5.60

Basic Residues 13

Acidic Residues 13

Hydrophobic Residues 84

Net Charge -1

Boman Index 9.57

Hydrophobicity -0.066

Aliphatic Index 94.48

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 37930

Absorbance 280nm 183.53

Polar Residues 58

number

18

A

8

R

14

N

11

D

0

C

2

E

13

Q

20

G

1

H

6

I

24

L

4

K

1

M

7

F

11

P

12

S

12

T

5

W

7

Y

16

V

Amino Acid Distribution

A: 18 R: 8 N: 14 D: 11 C: 0 E: 2 Q: 13 G: 20 H: 1 I: 6 L: 24 K: 4 M: 1 F: 7 P: 11 S: 12 T: 12 W: 5 Y: 7 V: 16

Length

192

Formula

C932H1440N254O277S1

Mass

20667.28

PI

5.60

Net Charge

-1

Boman Index

9.57

Hydrophobicity

-0.066

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.