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Peptide record

TPDB14649

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB14649
Antibacterial
Anti-infective peptides
dbAMP Peptipedia
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.
Sequence
LSAIWSGIKS
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C49H80N12O14
RNDCEQHMFPTYV
S
1061.25
10.10
1
0
5
+1
-0.41
0.700
127.00
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
5500
5.18
3
Residue Composition
number
1
A
0
R
0
N
0
D
0
C
0
E
0
Q
1
G
0
H
2
I
1
L
1
K
0
M
0
F
0
P
3
S
0
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 2 L: 1 K: 1 M: 0 F: 0 P: 0 S: 3 T: 0 W: 1 Y: 0 V: 0
Chemical Descriptors
10 reviewed residue count
C49H80N12O14 sequence-only estimate (linear, free termini)
1061.25 sequence-only estimate (linear, free termini)
10.10 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
-0.41 sequence-only estimate (linear, free termini)
0.700 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.