Back to search

Peptide record

TPDB14226

Antibacterial Antiparasitic standard
72 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB14226
Antibacterial Antiparasitic
Anti-infective peptides
dbAMP DRAMP Peptipedia dbAMP 3.0
standard
No
A 72-aa standard-residue multi-activity (Antibacterial and Antiparasitic) peptide sequence curated from dbAMP, DRAMP, Peptipedia, and other sources, with an available 3D structural model.
Sequence
GFREKHFQRFVKYAVPESTLRTVLQTVVHKVGKTQFGCSAYQGYCDDHCQDIEKKEGFCHGFKCKCGIPMGF
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C368H558N102O101S7
NW
GK
8251.52
8.56
15
7
23
+4
1.67
-0.449
48.61
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
4845
0.59
20
Residue Composition
number
2
A
3
R
0
N
3
D
6
C
4
E
5
Q
8
G
4
H
2
I
2
L
8
K
1
M
7
F
2
P
2
S
4
T
0
W
3
Y
6
V
Amino Acid Distribution
A: 2 R: 3 N: 0 D: 3 C: 6 E: 4 Q: 5 G: 8 H: 4 I: 2 L: 2 K: 8 M: 1 F: 7 P: 2 S: 2 T: 4 W: 0 Y: 3 V: 6
Chemical Descriptors
72 reviewed residue count
C368H558N102O101S7 sequence-only estimate (linear, free termini)
8251.52 sequence-only estimate (linear, free termini)
8.56 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
1.67 sequence-only estimate (linear, free termini)
-0.449 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP dbAMP 3.0 DRAMP