TPDB

3D PDB MODEL

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TPDB ID TPDB14014

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 33-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

CGGACYCRIPACIAGERRYGTCIYQGRLWAFCC

FASTA

>TPDB14014|Antibacterial|length=33
CGGACYCRIPACIAGERRYGTCIYQGRLWAFCC

Formula C157H239N47O41S7

Absent Amino Acids NDHKMSV

Common Amino Acids C

Mass 3665.34

PI 8.19

Basic Residues 4

Acidic Residues 1

Hydrophobic Residues 13

Net Charge +3

Boman Index -3.17

Hydrophobicity 0.324

Aliphatic Index 59.39

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 10345

Absorbance 280nm 282.24

Polar Residues 12

number

4

A

4

R

0

N

0

D

7

C

1

E

1

Q

5

G

0

H

3

I

1

L

0

K

0

M

1

F

1

P

0

S

1

T

1

W

3

Y

0

V

Amino Acid Distribution

A: 4 R: 4 N: 0 D: 0 C: 7 E: 1 Q: 1 G: 5 H: 0 I: 3 L: 1 K: 0 M: 0 F: 1 P: 1 S: 0 T: 1 W: 1 Y: 3 V: 0

Length

33

Formula

C157H239N47O41S7

Mass

3665.34

PI

8.19

Net Charge

+3

Boman Index

-3.17

Hydrophobicity

0.324

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.