TPDB

3D PDB MODEL

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TPDB ID TPDB14012

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

CGETCVGGTCNTPGCTCSWDKCTRNGLPV

FASTA

>TPDB14012|Antibacterial|length=29
CGETCVGGTCNTPGCTCSWDKCTRNGLPV

Formula C117H188N36O42S6

Absent Amino Acids AQHIMFY

Common Amino Acids C

Mass 2963.36

PI 5.97

Basic Residues 2

Acidic Residues 2

Hydrophobic Residues 4

Net Charge -0

Boman Index 3.96

Hydrophobicity -0.193

Aliphatic Index 33.45

Half Life

Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5875

Absorbance 280nm 198.25

Polar Residues 14

number

0

A

1

R

2

N

1

D

6

C

1

E

0

Q

5

G

0

H

0

I

1

L

1

K

0

M

0

F

2

P

1

S

5

T

1

W

0

Y

2

V

Amino Acid Distribution

A: 0 R: 1 N: 2 D: 1 C: 6 E: 1 Q: 0 G: 5 H: 0 I: 0 L: 1 K: 1 M: 0 F: 0 P: 2 S: 1 T: 5 W: 1 Y: 0 V: 2

Length

29

Formula

C117H188N36O42S6

Mass

2963.36

PI

5.97

Net Charge

-0

Boman Index

3.96

Hydrophobicity

-0.193

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.