TPDB

3D PDB MODEL

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TPDB ID TPDB14005

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 29-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

AWLDKLKSLGKVVGKVGLGVVQNYLNPRQ

FASTA

>TPDB14005|Antibacterial|length=29
AWLDKLKSLGKVVGKVGLGVVQNYLNPRQ

Formula C146H243N41O38

Absent Amino Acids CEHIMFT

Common Amino Acids LV

Mass 3180.79

PI 10.63

Basic Residues 5

Acidic Residues 1

Hydrophobic Residues 13

Net Charge +4

Boman Index 3.21

Hydrophobicity -0.069

Aliphatic Index 120.69

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 6990

Absorbance 280nm 219.76

Polar Residues 6

number

1

A

1

R

2

N

1

D

0

C

0

E

2

Q

4

G

0

H

0

I

5

L

4

K

0

M

0

F

1

P

1

S

0

T

1

W

1

Y

5

V

Amino Acid Distribution

A: 1 R: 1 N: 2 D: 1 C: 0 E: 0 Q: 2 G: 4 H: 0 I: 0 L: 5 K: 4 M: 0 F: 0 P: 1 S: 1 T: 0 W: 1 Y: 1 V: 5

Length

29

Formula

C146H243N41O38

Mass

3180.79

PI

10.63

Net Charge

+4

Boman Index

3.21

Hydrophobicity

-0.069

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.