TPDB

3D PDB MODEL

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TPDB ID TPDB13962

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 38-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

APLSCGRNGGVCIPIRCPVPMRQIGTCFGRPVKCCRSW

FASTA

>TPDB13962|Antibacterial|length=38
APLSCGRNGGVCIPIRCPVPMRQIGTCFGRPVKCCRSW

Formula C175H289N57O44S7

Absent Amino Acids DEHY

Common Amino Acids C

Mass 4120.00

PI 9.43

Basic Residues 6

Acidic Residues 0

Hydrophobic Residues 11

Net Charge +6

Boman Index 2.64

Hydrophobicity 0.126

Aliphatic Index 66.58

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5875

Absorbance 280nm 142.60

Polar Residues 11

number

1

A

5

R

1

N

0

D

6

C

0

E

1

Q

5

G

0

H

3

I

1

L

1

K

1

M

1

F

5

P

2

S

1

T

1

W

0

Y

3

V

Amino Acid Distribution

A: 1 R: 5 N: 1 D: 0 C: 6 E: 0 Q: 1 G: 5 H: 0 I: 3 L: 1 K: 1 M: 1 F: 1 P: 5 S: 2 T: 1 W: 1 Y: 0 V: 3

Length

38

Formula

C175H289N57O44S7

Mass

4120.00

PI

9.43

Net Charge

+6

Boman Index

2.64

Hydrophobicity

0.126

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.