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Peptide record

TPDB13905

Antibacterial Antifungal standard
249 amino acids
Basic Information
3D PDB MODEL
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TPDB13905
Antibacterial Antifungal
Anti-infective peptides
dbAMP CAFPdb
standard
No
A 249-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from dbAMP and CAFPdb, with an available 3D structural model.
Sequence
ADNFSLHDALSGSGNPNPQGWPGAWGNQPAGAGGYPGASYPGAYPGQAPPGAYPGQAPPGAYPGAPGAYPGAPAPGVYPGPPSGPGAYPSSGQPSATGAYPATGPYGAPAGPLIVPYNLPLPGGVVPRMLITILGTVKPNANRIALDFQRGNDVAFHFNPRFNENNRRVIVCNTKLDNNWGREERQSVFPFESGKPFKIQVLVEPDHFKVAVNDAHLLQYNHRVKKLNEISKLGISGDIDLTSASYTMI
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C1178H1768N324O341S3
P
26021.14
8.92
22
15
93
+2
1.04
-0.404
66.31
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
35870
1.38
62
Residue Composition
number
27
A
9
R
18
N
9
D
1
C
6
E
9
Q
34
G
5
H
10
I
15
L
8
K
2
M
9
F
36
P
14
S
7
T
3
W
13
Y
14
V
Amino Acid Distribution
A: 27 R: 9 N: 18 D: 9 C: 1 E: 6 Q: 9 G: 34 H: 5 I: 10 L: 15 K: 8 M: 2 F: 9 P: 36 S: 14 T: 7 W: 3 Y: 13 V: 14
Chemical Descriptors
249 reviewed residue count
C1178H1768N324O341S3 sequence-only estimate (linear, free termini)
26021.14 sequence-only estimate (linear, free termini)
8.92 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
1.04 sequence-only estimate (linear, free termini)
-0.404 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb