TPDB

3D PDB MODEL

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TPDB ID TPDB13892

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 30-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

ACYCRIPACIAGERRYGTCIYQGRLAAFCC

FASTA

>TPDB13892|Antibacterial|length=30
ACYCRIPACIAGERRYGTCIYQGRLAAFCC

Formula C142H223N43O38S6

Absent Amino Acids NDHKMSWV

Common Amino Acids C

Mass 3332.96

PI 8.30

Basic Residues 4

Acidic Residues 1

Hydrophobic Residues 13

Net Charge +3

Boman Index -1.27

Hydrophobicity 0.390

Aliphatic Index 68.67

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 4845

Absorbance 280nm 145.37

Polar Residues 11

number

5

A

4

R

0

N

0

D

6

C

1

E

1

Q

3

G

0

H

3

I

1

L

0

K

0

M

1

F

1

P

0

S

1

T

0

W

3

Y

0

V

Amino Acid Distribution

A: 5 R: 4 N: 0 D: 0 C: 6 E: 1 Q: 1 G: 3 H: 0 I: 3 L: 1 K: 0 M: 0 F: 1 P: 1 S: 0 T: 1 W: 0 Y: 3 V: 0

Length

30

Formula

C142H223N43O38S6

Mass

3332.96

PI

8.30

Net Charge

+3

Boman Index

-1.27

Hydrophobicity

0.390

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.