TPDB

3D PDB MODEL

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TPDB ID TPDB13890

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 30-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

ACYCRIPACIAGERRYGTCIYAGRLWAFCC

FASTA

>TPDB13890|Antibacterial|length=30
ACYCRIPACIAGERRYGTCIYAGRLWAFCC

Formula C148H225N43O37S6

Absent Amino Acids NDQHKMSV

Common Amino Acids C

Mass 3391.04

PI 8.30

Basic Residues 4

Acidic Residues 1

Hydrophobic Residues 14

Net Charge +3

Boman Index -3.70

Hydrophobicity 0.477

Aliphatic Index 68.67

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 10345

Absorbance 280nm 305.07

Polar Residues 10

number

5

A

4

R

0

N

0

D

6

C

1

E

0

Q

3

G

0

H

3

I

1

L

0

K

0

M

1

F

1

P

0

S

1

T

1

W

3

Y

0

V

Amino Acid Distribution

A: 5 R: 4 N: 0 D: 0 C: 6 E: 1 Q: 0 G: 3 H: 0 I: 3 L: 1 K: 0 M: 0 F: 1 P: 1 S: 0 T: 1 W: 1 Y: 3 V: 0

Length

30

Formula

C148H225N43O37S6

Mass

3391.04

PI

8.30

Net Charge

+3

Boman Index

-3.70

Hydrophobicity

0.477

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.