TPDB

3D PDB MODEL

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TPDB ID TPDB13888

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 30-aa standard natural antibacterial peptide sequence curated from dbAMP and Peptipedia, with an available 3D structural model.

Sequence

ACYCRIPACIAGERRAGTCIYQGRLWAFCC

FASTA

>TPDB13888|Antibacterial|length=30
ACYCRIPACIAGERRAGTCIYQGRLWAFCC

Formula C144H224N44O37S6

Absent Amino Acids NDHKMSV

Common Amino Acids C

Mass 3356.00

PI 8.31

Basic Residues 4

Acidic Residues 1

Hydrophobic Residues 13

Net Charge +3

Boman Index -2.18

Hydrophobicity 0.403

Aliphatic Index 68.67

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 8855

Absorbance 280nm 263.86

Polar Residues 10

number

5

A

4

R

0

N

0

D

6

C

1

E

1

Q

3

G

0

H

3

I

1

L

0

K

0

M

1

F

1

P

0

S

1

T

1

W

2

Y

0

V

Amino Acid Distribution

A: 5 R: 4 N: 0 D: 0 C: 6 E: 1 Q: 1 G: 3 H: 0 I: 3 L: 1 K: 0 M: 0 F: 1 P: 1 S: 0 T: 1 W: 1 Y: 2 V: 0

Length

30

Formula

C144H224N44O37S6

Mass

3356.00

PI

8.31

Net Charge

+3

Boman Index

-2.18

Hydrophobicity

0.403

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.