TPDB

3D PDB MODEL

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TPDB ID TPDB13600

Activity

Antibacterial Anticancer Antifungal Antiparasitic

Activity_category_statistics

Anti-infective peptides Cancer-related peptides

Database_Source

AntiBP3 dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 30-aa standard natural multi-activity (Antibacterial, Anticancer, Antifungal, and other sources) peptide sequence curated from AntiBP3, dbAMP, and Peptipedia, with an available 3D structural model.

Sequence

AKEFGIPAAVAGTVLNVVEAGGWVTTIVSI

FASTA

>TPDB13600|Antibacterial;Anticancer;Antifungal;Antiparasitic|length=30
AKEFGIPAAVAGTVLNVVEAGGWVTTIVSI

Formula C137H221N33O40

Absent Amino Acids RDCQHMY

Common Amino Acids V

Mass 2970.46

PI 4.26

Basic Residues 1

Acidic Residues 2

Hydrophobic Residues 17

Net Charge -1

Boman Index 1.59

Hydrophobicity 1.097

Aliphatic Index 126.67

Half Life

Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 5500

Absorbance 280nm 185.16

Polar Residues 5

number

5

A

0

R

1

N

0

D

0

C

2

E

0

Q

4

G

0

H

3

I

1

L

1

K

0

M

1

F

1

P

1

S

3

T

1

W

0

Y

6

V

Amino Acid Distribution

A: 5 R: 0 N: 1 D: 0 C: 0 E: 2 Q: 0 G: 4 H: 0 I: 3 L: 1 K: 1 M: 0 F: 1 P: 1 S: 1 T: 3 W: 1 Y: 0 V: 6

Length

30

Formula

C137H221N33O40

Mass

2970.46

PI

4.26

Net Charge

-1

Boman Index

1.59

Hydrophobicity

1.097

Evidence 1 Activity

Source & Reference

Database Source dbAMP