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Peptide record

TPDB13255

Antibacterial Antifungal standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB13255
Antibacterial Antifungal
Anti-infective peptides
AntiBP3 Peptipedia CAFPdb dbAMP
standard
No
A 20-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from AntiBP3, Peptipedia, CAFPdb, and other sources, with an available 3D structural model.
Sequence
SNVMEERKIKVYLPRMKMEE
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C108H184N30O32S3
ADCQGHFTW
E
2511.01
9.58
5
4
8
+1
2.95
-0.975
68.00
Mammalian: 1.9 hour Yeast: >20 hour E.coli: >10 hour
1490
0.59
3
Residue Composition
number
0
A
2
R
1
N
0
D
0
C
4
E
0
Q
0
G
0
H
1
I
1
L
3
K
3
M
0
F
1
P
1
S
0
T
0
W
1
Y
2
V
Amino Acid Distribution
A: 0 R: 2 N: 1 D: 0 C: 0 E: 4 Q: 0 G: 0 H: 0 I: 1 L: 1 K: 3 M: 3 F: 0 P: 1 S: 1 T: 0 W: 0 Y: 1 V: 2
Chemical Descriptors
20 reviewed residue count
C108H184N30O32S3 sequence-only estimate (linear, free termini)
2511.01 sequence-only estimate (linear, free termini)
9.58 sequence-only estimate (linear, free termini)
+1 sequence-only estimate (linear, free termini)
2.95 sequence-only estimate (linear, free termini)
-0.975 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb