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Peptide record

TPDB13236

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB13236
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
KFRTRRSKSSSNGGRKGSKG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C88H157N37O28
ADCEQHILMPWYV
S
2181.45
12.89
8
0
1
+8
5.07
-2.030
0.00
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
0
0.00
7
Residue Composition
number
0
A
4
R
1
N
0
D
0
C
0
E
0
Q
4
G
0
H
0
I
0
L
4
K
0
M
1
F
0
P
5
S
1
T
0
W
0
Y
0
V
Amino Acid Distribution
A: 0 R: 4 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 4 H: 0 I: 0 L: 0 K: 4 M: 0 F: 1 P: 0 S: 5 T: 1 W: 0 Y: 0 V: 0
Chemical Descriptors
20 reviewed residue count
C88H157N37O28 sequence-only estimate (linear, free termini)
2181.45 sequence-only estimate (linear, free termini)
12.89 sequence-only estimate (linear, free termini)
+8 sequence-only estimate (linear, free termini)
5.07 sequence-only estimate (linear, free termini)
-2.030 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.