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Peptide record

TPDB13197

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB13197
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
GCKKYRRFRWKFKGKLFLFG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C125H189N35O22S1
ANDEQHIMPSTV
K
2566.16
11.60
8
0
8
+8
2.22
-0.755
39.00
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
6990
2.72
2
Residue Composition
number
0
A
3
R
0
N
0
D
1
C
0
E
0
Q
3
G
0
H
0
I
2
L
5
K
0
M
4
F
0
P
0
S
0
T
1
W
1
Y
0
V
Amino Acid Distribution
A: 0 R: 3 N: 0 D: 0 C: 1 E: 0 Q: 0 G: 3 H: 0 I: 0 L: 2 K: 5 M: 0 F: 4 P: 0 S: 0 T: 0 W: 1 Y: 1 V: 0
Chemical Descriptors
20 reviewed residue count
C125H189N35O22S1 sequence-only estimate (linear, free termini)
2566.16 sequence-only estimate (linear, free termini)
11.60 sequence-only estimate (linear, free termini)
+8 sequence-only estimate (linear, free termini)
2.22 sequence-only estimate (linear, free termini)
-0.755 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA