Back to search

Peptide record

TPDB13086

Antibacterial standard
18 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB13086
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 18-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
CILRWLARKIPWHAKKYG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C107H167N31O20S1
NDEQMFSTV
K
2239.76
10.89
6
0
9
+5
1.17
-0.350
97.78
Mammalian: 1.2 hour Yeast: >20 hour E.coli: >10 hour
12490
5.58
2
Residue Composition
number
2
A
2
R
0
N
0
D
1
C
0
E
0
Q
1
G
1
H
2
I
2
L
3
K
0
M
0
F
1
P
0
S
0
T
2
W
1
Y
0
V
Amino Acid Distribution
A: 2 R: 2 N: 0 D: 0 C: 1 E: 0 Q: 0 G: 1 H: 1 I: 2 L: 2 K: 3 M: 0 F: 0 P: 1 S: 0 T: 0 W: 2 Y: 1 V: 0
Chemical Descriptors
18 reviewed residue count
C107H167N31O20S1 sequence-only estimate (linear, free termini)
2239.76 sequence-only estimate (linear, free termini)
10.89 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
1.17 sequence-only estimate (linear, free termini)
-0.350 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA