Back to search

Peptide record

TPDB13029

Antibacterial standard
17 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB13029
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 17-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
RILAKATRRLVKLIVSG
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C85H160N28O20
NDCEQHMFPWY
RL
1894.38
12.71
5
0
9
+5
1.45
0.541
160.59
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
0
0.00
2
Residue Composition
number
2
A
3
R
0
N
0
D
0
C
0
E
0
Q
1
G
0
H
2
I
3
L
2
K
0
M
0
F
0
P
1
S
1
T
0
W
0
Y
2
V
Amino Acid Distribution
A: 2 R: 3 N: 0 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 2 L: 3 K: 2 M: 0 F: 0 P: 0 S: 1 T: 1 W: 0 Y: 0 V: 2
Chemical Descriptors
17 reviewed residue count
C85H160N28O20 sequence-only estimate (linear, free termini)
1894.38 sequence-only estimate (linear, free termini)
12.71 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
1.45 sequence-only estimate (linear, free termini)
0.541 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA