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Peptide record

TPDB12324

Antibacterial standard
10 amino acids
Basic Information
3D PDB MODEL
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TPDB12324
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 10-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
GYCKGAFKQT
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C49H75N13O14S1
RNDEHILMPSWV
GK
1102.27
9.68
2
0
3
+2
1.14
-0.700
10.00
Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour
1490
1.35
4
Residue Composition
number
1
A
0
R
0
N
0
D
1
C
0
E
1
Q
2
G
0
H
0
I
0
L
2
K
0
M
1
F
0
P
0
S
1
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 1 E: 0 Q: 1 G: 2 H: 0 I: 0 L: 0 K: 2 M: 0 F: 1 P: 0 S: 0 T: 1 W: 0 Y: 1 V: 0
Chemical Descriptors
10 reviewed residue count
C49H75N13O14S1 sequence-only estimate (linear, free termini)
1102.27 sequence-only estimate (linear, free termini)
9.68 sequence-only estimate (linear, free termini)
+2 sequence-only estimate (linear, free termini)
1.14 sequence-only estimate (linear, free termini)
-0.700 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA