Back to search

Peptide record

TPDB12043

Antibacterial Antifungal standard
44 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB12043
Antibacterial Antifungal
Anti-infective peptides
AntiBP3 Peptipedia Antifungipept CAFPdb dbAMP
standard
No
A 44-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from AntiBP3, Peptipedia, Antifungipept, and other sources, with an available 3D structural model.
Sequence
DKLIGSCVWGAVNYTSDCAAECKRRGYKGGHCGSFANVNCWCRT
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C202H309N63O61S6
QMP
CG
4788.42
8.30
7
3
14
+3
1.72
-0.320
46.59
Mammalian: 1.1 hour Yeast: 3 min E.coli: >10 hour
14355
3.00
16
Residue Composition
number
4
A
3
R
3
N
2
D
6
C
1
E
0
Q
6
G
1
H
1
I
1
L
3
K
0
M
1
F
0
P
3
S
2
T
2
W
2
Y
3
V
Amino Acid Distribution
A: 4 R: 3 N: 3 D: 2 C: 6 E: 1 Q: 0 G: 6 H: 1 I: 1 L: 1 K: 3 M: 0 F: 1 P: 0 S: 3 T: 2 W: 2 Y: 2 V: 3
Chemical Descriptors
44 reviewed residue count
C202H309N63O61S6 sequence-only estimate (linear, free termini)
4788.42 sequence-only estimate (linear, free termini)
8.30 sequence-only estimate (linear, free termini)
+3 sequence-only estimate (linear, free termini)
1.72 sequence-only estimate (linear, free termini)
-0.320 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb Antifungipept