Back to search

Peptide record

TPDB11864

Antibacterial Antifungal standard
40 amino acids
Basic Information
3D PDB MODEL
Drag to rotate. Click a residue or atom to inspect it; the selected residue is highlighted in amber.
TPDB11864
Antibacterial Antifungal
Anti-infective peptides
AntiBP3 dbAMP Peptipedia Antifungipept CAFPdb
standard
No
A 40-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from AntiBP3, dbAMP, Peptipedia, and other sources, with an available 3D structural model.
Sequence
YSRCQLQGFNCVVRSYGLPTIPCCRGSYFPGSTYGRCQRP
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C196H299N59O55S5
ADEHKMW
RCG
4522.19
9.15
5
0
11
+5
1.93
-0.403
43.75
Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min
6210
1.37
19
Residue Composition
number
0
A
5
R
1
N
0
D
5
C
0
E
3
Q
5
G
0
H
1
I
2
L
0
K
0
M
2
F
4
P
4
S
2
T
0
W
4
Y
2
V
Amino Acid Distribution
A: 0 R: 5 N: 1 D: 0 C: 5 E: 0 Q: 3 G: 5 H: 0 I: 1 L: 2 K: 0 M: 0 F: 2 P: 4 S: 4 T: 2 W: 0 Y: 4 V: 2
Chemical Descriptors
40 reviewed residue count
C196H299N59O55S5 sequence-only estimate (linear, free termini)
4522.19 sequence-only estimate (linear, free termini)
9.15 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
1.93 sequence-only estimate (linear, free termini)
-0.403 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb Antifungipept