TPDB

3D PDB MODEL

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TPDB ID TPDB11760

Activity

Antibacterial

Activity_category_statistics

Anti-infective peptides

Database_Source

AntiBP3 dbAMP Peptipedia

Sequence_Type

standard

Has_Modification No

Description A 38-aa standard natural antibacterial peptide sequence curated from AntiBP3, dbAMP, and Peptipedia, with an available 3D structural model.

Sequence

GRKSDCFRKSGFCAFLKPSLTLISGKCSRFYLCCKRIW

FASTA

>TPDB11760|Antibacterial|length=38
GRKSDCFRKSGFCAFLKPSLTLISGKCSRFYLCCKRIW

Formula C198H314N56O48S5

Absent Amino Acids NEQHMV

Common Amino Acids CKS

Mass 4407.32

PI 10.21

Basic Residues 9

Acidic Residues 1

Hydrophobic Residues 13

Net Charge +8

Boman Index -0.85

Hydrophobicity -0.026

Aliphatic Index 64.21

Half Life

Mammalian: 30 hour Yeast: >20 hour E.coli: >10 hour

Extinction Coefficient Cystines 7240

Absorbance 280nm 164.27

Polar Residues 12

number

1

A

4

R

0

N

1

D

5

C

0

E

0

Q

3

G

0

H

2

I

4

L

5

K

0

M

4

F

1

P

5

S

1

T

1

W

1

Y

0

V

Amino Acid Distribution

A: 1 R: 4 N: 0 D: 1 C: 5 E: 0 Q: 0 G: 3 H: 0 I: 2 L: 4 K: 5 M: 0 F: 4 P: 1 S: 5 T: 1 W: 1 Y: 1 V: 0

Length

38

Formula

C198H314N56O48S5

Mass

4407.32

PI

10.21

Net Charge

+8

Boman Index

-0.85

Hydrophobicity

-0.026

Evidence 1 Activity

Source & Reference

Database Source dbAMP

Other

Source Activity Label	Source Definition
Antibacterial	dbAMP classified as Antibacterial under the Anti-bacterial function class.