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Peptide record

TPDB11207

Antibacterial Antifungal standard
30 amino acids
Basic Information
3D PDB MODEL
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TPDB11207
Antibacterial Antifungal
Anti-infective peptides
AntiBP3 Peptipedia CAFPdb dbAMP
standard
No
A 30-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from AntiBP3, Peptipedia, CAFPdb, and other sources, with an available 3D structural model.
Sequence
YDPEAASAPGSGNPCHEASAAQKENAGEDP
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C121H180N36O50S1
RILMFTWV
A
2971.03
3.82
2
6
8
-5
2.24
-1.160
23.33
Mammalian: 2.8 hour Yeast: 10 min E.coli: 2 min
1490
0.50
8
Residue Composition
number
7
A
0
R
2
N
2
D
1
C
4
E
1
Q
3
G
1
H
0
I
0
L
1
K
0
M
0
F
4
P
3
S
0
T
0
W
1
Y
0
V
Amino Acid Distribution
A: 7 R: 0 N: 2 D: 2 C: 1 E: 4 Q: 1 G: 3 H: 1 I: 0 L: 0 K: 1 M: 0 F: 0 P: 4 S: 3 T: 0 W: 0 Y: 1 V: 0
Chemical Descriptors
30 reviewed residue count
C121H180N36O50S1 sequence-only estimate (linear, free termini)
2971.03 sequence-only estimate (linear, free termini)
3.82 sequence-only estimate (linear, free termini)
-5 sequence-only estimate (linear, free termini)
2.24 sequence-only estimate (linear, free termini)
-1.160 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb