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Peptide record

TPDB10981

Antibacterial Antifungal standard
28 amino acids
Basic Information
3D PDB MODEL
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TPDB10981
Antibacterial Antifungal
Anti-infective peptides
AntiBP3 Peptipedia CAFPdb dbAMP
standard
No
A 28-aa standard-residue multi-activity (Antibacterial and Antifungal) peptide sequence curated from AntiBP3, Peptipedia, CAFPdb, and other sources, with an available 3D structural model.
Sequence
ATAWNLGPHGLRPIRPIRIRPLCGKDKS
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C139H232N46O34S1
EQMFYV
RP
3123.72
11.96
7
1
9
+5
2.04
-0.536
90.71
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
5500
1.76
4
Residue Composition
number
2
A
4
R
1
N
1
D
1
C
0
E
0
Q
3
G
1
H
3
I
3
L
2
K
0
M
0
F
4
P
1
S
1
T
1
W
0
Y
0
V
Amino Acid Distribution
A: 2 R: 4 N: 1 D: 1 C: 1 E: 0 Q: 0 G: 3 H: 1 I: 3 L: 3 K: 2 M: 0 F: 0 P: 4 S: 1 T: 1 W: 1 Y: 0 V: 0
Chemical Descriptors
28 reviewed residue count
C139H232N46O34S1 sequence-only estimate (linear, free termini)
3123.72 sequence-only estimate (linear, free termini)
11.96 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
2.04 sequence-only estimate (linear, free termini)
-0.536 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP CAFPdb