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Peptide record

TPDB09787

Antibacterial Antifungal Toxicity standard
21 amino acids
Basic Information
3D PDB MODEL
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TPDB09787
Antibacterial Antifungal Toxicity
Anti-infective peptides Toxicity and safety peptides
AntiBP3 dbAMP DRAMP Peptipedia Antifungipept CAFPdb
standard
No
A 21-aa standard-residue multi-activity (Antibacterial, Antifungal, and Toxicity) peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
RIKRFWPVVIRTVVAGYNLYR
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C124H196N36O26
DCEQHMS
RV
2607.15
11.96
5
0
12
+5
1.70
0.124
115.71
Mammalian: 1 hour Yeast: 2 min E.coli: 2 min
8480
3.25
4
Residue Composition
number
1
A
4
R
1
N
0
D
0
C
0
E
0
Q
1
G
0
H
2
I
1
L
1
K
0
M
1
F
1
P
0
S
1
T
1
W
2
Y
4
V
Amino Acid Distribution
A: 1 R: 4 N: 1 D: 0 C: 0 E: 0 Q: 0 G: 1 H: 0 I: 2 L: 1 K: 1 M: 0 F: 1 P: 1 S: 0 T: 1 W: 1 Y: 2 V: 4
Chemical Descriptors
21 reviewed residue count
C124H196N36O26 sequence-only estimate (linear, free termini)
2607.15 sequence-only estimate (linear, free termini)
11.96 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
1.70 sequence-only estimate (linear, free termini)
0.124 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Activity

Toxicity
Hemolytic Cytotoxic
- | NA | target cell: Human erythrocytes

Target

Human erythrocytes

Source & Reference

NA
DBAASP
Structure-function relationship of antimicrobial peptide cathelicidin Pc-CATH1 | Nat Prod Bioprospect | 2012