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Peptide record

TPDB09535

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09535
Antibacterial
Anti-infective peptides
AntiBP3 dbAMP DRAMP Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3, dbAMP, DRAMP, and other sources, with an available 3D structural model.
Sequence
LSIRRLLAAGVLKQTKGVGA
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C91H167N29O24
NDCEHMFPWY
L
2051.51
12.42
4
0
10
+4
0.58
0.525
141.50
Mammalian: 5.5 hour Yeast: 3 min E.coli: 2 min
0
0.00
3
Residue Composition
number
3
A
2
R
0
N
0
D
0
C
0
E
1
Q
3
G
0
H
1
I
4
L
2
K
0
M
0
F
0
P
1
S
1
T
0
W
0
Y
2
V
Amino Acid Distribution
A: 3 R: 2 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 3 H: 0 I: 1 L: 4 K: 2 M: 0 F: 0 P: 0 S: 1 T: 1 W: 0 Y: 0 V: 2
Chemical Descriptors
20 reviewed residue count
C91H167N29O24 sequence-only estimate (linear, free termini)
2051.51 sequence-only estimate (linear, free termini)
12.42 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
0.58 sequence-only estimate (linear, free termini)
0.525 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

dbAMP DRAMP

Other

Source Activity Label Source Definition
Antibacterial
dbAMP classified as Antibacterial under the Anti-bacterial function class.