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Peptide record

TPDB09515

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09515
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
AFGVLAKVAAHVVPAIAEHF
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C98H151N25O23
RNDCQMSTWY
A
2047.43
7.97
3
1
14
+0
-1.10
1.285
127.00
Mammalian: 4.4 hour Yeast: >20 hour E.coli: >10 hour
0
0.00
0
Residue Composition
number
6
A
0
R
0
N
0
D
0
C
1
E
0
Q
1
G
2
H
1
I
1
L
1
K
0
M
2
F
1
P
0
S
0
T
0
W
0
Y
4
V
Amino Acid Distribution
A: 6 R: 0 N: 0 D: 0 C: 0 E: 1 Q: 0 G: 1 H: 2 I: 1 L: 1 K: 1 M: 0 F: 2 P: 1 S: 0 T: 0 W: 0 Y: 0 V: 4
Chemical Descriptors
20 reviewed residue count
C98H151N25O23 sequence-only estimate (linear, free termini)
2047.43 sequence-only estimate (linear, free termini)
7.97 sequence-only estimate (linear, free termini)
+0 sequence-only estimate (linear, free termini)
-1.10 sequence-only estimate (linear, free termini)
1.285 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA