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Peptide record

TPDB09493

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09493
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
KAMKPWIQPKTKVIPYVRYL
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C119H191N29O25S1
NDCEGHFS
K
2460.07
10.70
5
0
10
+5
0.81
-0.385
92.50
Mammalian: 1.3 hour Yeast: 3 min E.coli: 2 min
8480
3.45
4
Residue Composition
number
1
A
1
R
0
N
0
D
0
C
0
E
1
Q
0
G
0
H
2
I
1
L
4
K
1
M
0
F
3
P
0
S
1
T
1
W
2
Y
2
V
Amino Acid Distribution
A: 1 R: 1 N: 0 D: 0 C: 0 E: 0 Q: 1 G: 0 H: 0 I: 2 L: 1 K: 4 M: 1 F: 0 P: 3 S: 0 T: 1 W: 1 Y: 2 V: 2
Chemical Descriptors
20 reviewed residue count
C119H191N29O25S1 sequence-only estimate (linear, free termini)
2460.07 sequence-only estimate (linear, free termini)
10.70 sequence-only estimate (linear, free termini)
+5 sequence-only estimate (linear, free termini)
0.81 sequence-only estimate (linear, free termini)
-0.385 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA