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Peptide record

TPDB09459

Antibacterial standard
20 amino acids
Basic Information
3D PDB MODEL
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TPDB09459
Antibacterial
Anti-infective peptides
AntiBP3 Peptipedia
standard
No
A 20-aa standard-residue antibacterial peptide sequence curated from AntiBP3 and Peptipedia, with an available 3D structural model.
Sequence
FVGGVASKVVPSVYCKVSKK
Physicochemical Analysis

Sequence-only estimates for a linear peptide with free termini, not experimentally measured molecular properties. Mass and formula exclude cyclization and disulfide formation. The optical estimates assume paired cysteines, 280 nm, 1 g/L and a 1 cm path. The N-end rule estimate is not a measured plasma half-life.

C96H160N24O25S1
RNDEQHILMTW
V
2082.53
10.31
4
0
9
+4
0.02
0.530
92.00
Mammalian: 1.1 hour Yeast: 3 min E.coli: 2 min
1490
0.72
5
Residue Composition
number
1
A
0
R
0
N
0
D
1
C
0
E
0
Q
2
G
0
H
0
I
0
L
4
K
0
M
1
F
1
P
3
S
0
T
0
W
1
Y
6
V
Amino Acid Distribution
A: 1 R: 0 N: 0 D: 0 C: 1 E: 0 Q: 0 G: 2 H: 0 I: 0 L: 0 K: 4 M: 0 F: 1 P: 1 S: 3 T: 0 W: 0 Y: 1 V: 6
Chemical Descriptors
20 reviewed residue count
C96H160N24O25S1 sequence-only estimate (linear, free termini)
2082.53 sequence-only estimate (linear, free termini)
10.31 sequence-only estimate (linear, free termini)
+4 sequence-only estimate (linear, free termini)
0.02 sequence-only estimate (linear, free termini)
0.530 sequence-only estimate (linear, free termini)
Evidence Records 1 records
Evidence 1 Activity

Source & Reference

NA